Parvin Shariati Gazgazareh; ALI AKBAR MASOUDI; Rasoul Vaez Torshizi; Alireza Ehsani; Zaynab Mousavian
Volume 22, Issue 2 , June 2020, , Pages 199-209
Abstract
The aim of this study was the investigation of gene expression profile in Shal sheep ovarian tissue using RNA sequencing data. For this purpose, the ovaries of five Shal sheep were isolated after estrous synchronization and their RNA was sequenced using Illumina Hiseq 4000 technology. On average, ...
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The aim of this study was the investigation of gene expression profile in Shal sheep ovarian tissue using RNA sequencing data. For this purpose, the ovaries of five Shal sheep were isolated after estrous synchronization and their RNA was sequenced using Illumina Hiseq 4000 technology. On average, the data obtained from the sequencing consisted of 26638311 read pairs with 81.08 unique mapping rate. The results of bioinformatic analyzes revealed the expression of 21085 genes in Shal sheep ovarian tissue, of which 15078 genes had expression mean above 10. Gene ontology analysis revealed the significant enrichment of 162 GO terms including 41 biological processes, 46 molecular functions and 75 cellular components. KEGG pathway analysis also identified 149 significant pathways (P <0.05), most important of which were estrogen signaling pathway, TGF-beta signaling pathway and oocyte meiosis. Investigating the expression of major genes for twining and reproduction, showed a high expression for INHA, INHBA and BMPR1B, so that INHA, an important paracrine factor in ovarian follicles, was one of the 10 genes with the highest expression. Also, FSHR, ESR1 and ESR2 showed medium expression and GDF9, BMP15 and PRLR showed low expression in the samples. For the first time, in this study the ovarian tissue transcriptome of Shal ewes was comprehensively studied using RNA-Seq technology and this study can provide a useful genetic basis for a better understanding of the genes and processes involved in the Shal sheep reproduction.
sajad pezeshki najafabadi; abolfazl shirazi
Volume 18, Issue 4 , December 2016, , Pages 679-686
Abstract
Transcription factors have important role in controls of animal fertility by binding to promoter regions of genes and regulation of their expression. In this study, nobox, ovol1 and zp3 genes expression, that are candidate genes involved in regulatory pathways of genes, in two categories of uniparous ...
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Transcription factors have important role in controls of animal fertility by binding to promoter regions of genes and regulation of their expression. In this study, nobox, ovol1 and zp3 genes expression, that are candidate genes involved in regulatory pathways of genes, in two categories of uniparous and multiparous Shall sheep were investigated. According to the pedigree of animals, a totally of six ewes selected from the herd of Qazvin Shall breeding center and applied for this experiment. After estrus synchronization, ewes were operated by general anesthesia technique and ovarian mature follicles were extracted by aspiration. After RNA extraction, sample’s cDNA was constructed. To investigation the expression of the above genes, a set of specific primers was designed for a gene, and then relative expression of these genes were measured using Real-Time PCR method and by employment of ∆∆Ct approach. Comparisons between the averages of data were done by T-Test Statistical procedure. In addition, promoter region and transcription factors of the genes investigated using BDGP software. The expression of nobox and ovol1 genes were significant in multiparous animals category (P